J3_9B50_024

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B50_024 not in the Motif Atlas

Geometric match to J3_8B0X_017

Geometric discrepancy: 0.045

The information below is about J3_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

9B50|1|BA|C|698
9B50|1|BA|A|699
9B50|1|BA|G|700
*
9B50|1|BA|C|732
9B50|1|BA|G|733
9B50|1|BA|A|734
9B50|1|BA|A|735
9B50|1|BA|C|736
*
9B50|1|BA|G|760
9B50|1|BA|A|761
9B50|1|BA|U|762
9B50|1|BA|G|763

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2