J3_9B50_028

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9B50|1|BA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B50_028 not in the Motif Atlas

Geometric match to J3_8B0X_019

Geometric discrepancy: 0.0721

The information below is about J3_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9B50|1|BA|C|1306
9B50|1|BA|A|1307
9B50|1|BA|A|1308
9B50|1|BA|G|1309
*
9B50|1|BA|C|1605
9B50|1|BA|C|1606
9B50|1|BA|C|1607
9B50|1|BA|A|1608
9B50|1|BA|A|1609
9B50|1|BA|A|1610
9B50|1|BA|C|1611
*
9B50|1|BA|G|1620
9B50|1|BA|U|1621
9B50|1|BA|G|1622

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34