J3_9B50_030

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9B50_030 not in the Motif Atlas

Geometric match to J3_8B0X_035

Geometric discrepancy: 0.0414

The information below is about J3_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9B50|1|BA|G|1424
9B50|1|BA|G|1425
9B50|1|BA|G|1426
9B50|1|BA|A|1427
9B50|1|BA|C|1428
9B50|1|BA|G|1429
*
9B50|1|BA|C|1564
9B50|1|BA|C|1565
*
9B50|1|BA|G|1568
9B50|1|BA|A|1569
9B50|1|BA|A|1570
9B50|1|BA|A|1571
9B50|1|BA|A|1572
9B50|1|BA|G|1573
9B50|1|BA|C|1574

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2