J3_9BDL_007

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9BDL|1|A18S|G|1274, 9BDL|1|A18S|G|1507, 9BDL|1|A18S|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDL_007 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1952

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

9BDL|1|A18S|C|1272
9BDL|1|A18S|C|1273
9BDL|1|A18S|G|1274
9BDL|1|A18S|G|1275
9BDL|1|A18S|A|1276
9BDL|1|A18S|C|1277
*
9BDL|1|A18S|G|1320
9BDL|1|A18S|G|1321
9BDL|1|A18S|G|1322
9BDL|1|A18S|U|1323
9BDL|1|A18S|G|1324
*
9BDL|1|A18S|U|1504
9BDL|1|A18S|U|1505
9BDL|1|A18S|A|1506
9BDL|1|A18S|G|1507
9BDL|1|A18S|A|1508
9BDL|1|A18S|U|1509
9BDL|1|A18S|G|1510

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS10

40S ribosomal protein S10

Chain AS29

40S ribosomal protein S29