J3_9BDL_017

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9BDL|1|A28S|U|2788, 9BDL|1|A28S|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDL_017 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.133

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9BDL|1|A28S|G|2402
9BDL|1|A28S|A|2403
9BDL|1|A28S|A|2404
9BDL|1|A28S|G|2405
*
9BDL|1|A28S|C|2785
9BDL|1|A28S|C|2786
9BDL|1|A28S|A|2787
9BDL|1|A28S|U|2788
9BDL|1|A28S|A|2789
9BDL|1|A28S|U|2790
9BDL|1|A28S|C|2791
*
9BDL|1|A28S|G|2800
9BDL|1|A28S|U|2801
9BDL|1|A28S|C|2802

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL34

60S ribosomal protein L34

Chain AL37

60S ribosomal protein L37

Chain AL39

60S ribosomal protein L39