J3_9BDL_019

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDL_019 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.2799

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9BDL|1|A28S|C|3937
9BDL|1|A28S|G|3938
9BDL|1|A28S|G|3939
*
9BDL|1|A28S|C|4074
9BDL|1|A28S|U|4075
9BDL|1|A28S|G|4076
9BDL|1|A28S|A|4077
9BDL|1|A28S|C|4078
*
9BDL|1|A28S|G|4168
9BDL|1|A28S|G|4169
9BDL|1|A28S|A|4170
9BDL|1|A28S|C|4171
9BDL|1|A28S|A|4172
9BDL|1|A28S|G|4173

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL08

Large ribosomal subunit protein eL8

Chain AL15

60S ribosomal protein L15