J3_9BDN_004
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDN_004 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1366
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A18S|C|1218
9BDN|1|A18S|C|1219
9BDN|1|A18S|A|1220
9BDN|1|A18S|G|1221
*
9BDN|1|A18S|C|1645
9BDN|1|A18S|C|1646
9BDN|1|A18S|A|1647
9BDN|1|A18S|G|1648
9BDN|1|A18S|U|1649
9BDN|1|A18S|A|1650
9BDN|1|A18S|A|1651
*
9BDN|1|A18S|U|1673
9BDN|1|A18S|G|1674
9BDN|1|A18S|A|1675
9BDN|1|A18S|U|1676
9BDN|1|A18S|U|1677
9BDN|1|A18S|A|1678
9BDN|1|A18S|A|1679
9BDN|1|A18S|G|1680
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS05
- Ribosomal protein S5
- Chain AS16
- Small ribosomal subunit protein uS9
- Chain AS28
- 40S ribosomal protein S28
- Chain ETRN
- Transfer RNA; tRNA
Coloring options: