3D structure

PDB id
9BDN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with angiogenin and tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9BDN_005 not in the Motif Atlas
Homologous match to J3_8C3A_039
Geometric discrepancy: 0.1009
The information below is about J3_8C3A_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.3
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

9BDN|1|A18S|U|1225
9BDN|1|A18S|G|1226
9BDN|1|A18S|G|1227
9BDN|1|A18S|A|1228
*
9BDN|1|A18S|U|1530
9BDN|1|A18S|A|1531
9BDN|1|A18S|C|1532
*
9BDN|1|A18S|G|1638
9BDN|1|A18S|G|1639
9BDN|1|A18S|A|1640
9BDN|1|A18S|A|1641

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS05
Ribosomal protein S5
Chain AS16
Small ribosomal subunit protein uS9
Chain AS18
40S ribosomal protein S18
Chain AS19
Small ribosomal subunit protein eS19
Chain ETRN
Transfer RNA; tRNA
Chain PTRN
Transfer RNA; tRNA

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