3D structure

PDB id
9BDN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with angiogenin and tRNAAla
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CCGGAC*GGGUG*UUAGAUG
Length
18 nucleotides
Bulged bases
9BDN|1|A18S|G|1274, 9BDN|1|A18S|G|1507, 9BDN|1|A18S|U|1509
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9BDN_007 not in the Motif Atlas
Homologous match to J3_4V88_038
Geometric discrepancy: 0.1242
The information below is about J3_4V88_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_75993.1
Basepair signature
cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
2

Unit IDs

9BDN|1|A18S|C|1272
9BDN|1|A18S|C|1273
9BDN|1|A18S|G|1274
9BDN|1|A18S|G|1275
9BDN|1|A18S|A|1276
9BDN|1|A18S|C|1277
*
9BDN|1|A18S|G|1320
9BDN|1|A18S|G|1321
9BDN|1|A18S|G|1322
9BDN|1|A18S|U|1323
9BDN|1|A18S|G|1324
*
9BDN|1|A18S|U|1504
9BDN|1|A18S|U|1505
9BDN|1|A18S|A|1506
9BDN|1|A18S|G|1507
9BDN|1|A18S|A|1508
9BDN|1|A18S|U|1509
9BDN|1|A18S|G|1510

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS10
40S ribosomal protein S10
Chain AS29
40S ribosomal protein S29

Coloring options:


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