J3_9BDN_007

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9BDN|1|A18S|G|1274, 9BDN|1|A18S|G|1507, 9BDN|1|A18S|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1242

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

9BDN|1|A18S|C|1272
9BDN|1|A18S|C|1273
9BDN|1|A18S|G|1274
9BDN|1|A18S|G|1275
9BDN|1|A18S|A|1276
9BDN|1|A18S|C|1277
*
9BDN|1|A18S|G|1320
9BDN|1|A18S|G|1321
9BDN|1|A18S|G|1322
9BDN|1|A18S|U|1323
9BDN|1|A18S|G|1324
*
9BDN|1|A18S|U|1504
9BDN|1|A18S|U|1505
9BDN|1|A18S|A|1506
9BDN|1|A18S|G|1507
9BDN|1|A18S|A|1508
9BDN|1|A18S|U|1509
9BDN|1|A18S|G|1510

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS10

40S ribosomal protein S10

Chain AS29

40S ribosomal protein S29