J3_9BDN_007
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9BDN|1|A18S|G|1274, 9BDN|1|A18S|G|1507, 9BDN|1|A18S|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDN_007 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1242
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9BDN|1|A18S|C|1272
9BDN|1|A18S|C|1273
9BDN|1|A18S|G|1274
9BDN|1|A18S|G|1275
9BDN|1|A18S|A|1276
9BDN|1|A18S|C|1277
*
9BDN|1|A18S|G|1320
9BDN|1|A18S|G|1321
9BDN|1|A18S|G|1322
9BDN|1|A18S|U|1323
9BDN|1|A18S|G|1324
*
9BDN|1|A18S|U|1504
9BDN|1|A18S|U|1505
9BDN|1|A18S|A|1506
9BDN|1|A18S|G|1507
9BDN|1|A18S|A|1508
9BDN|1|A18S|U|1509
9BDN|1|A18S|G|1510
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS10
- 40S ribosomal protein S10
- Chain AS29
- 40S ribosomal protein S29
Coloring options: