J3_9BDN_014

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9BDN|1|A28S|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_014 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0937

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

9BDN|1|A28S|C|2393
9BDN|1|A28S|G|2394
9BDN|1|A28S|A|2395
9BDN|1|A28S|A|2396
9BDN|1|A28S|G|2397
9BDN|1|A28S|U|2398
9BDN|1|A28S|G|2399
*
9BDN|1|A28S|C|2805
9BDN|1|A28S|A|2806
9BDN|1|A28S|A|2807
*
9BDN|1|A28S|U|2819
9BDN|1|A28S|C|2820
9BDN|1|A28S|U|2821
9BDN|1|A28S|G|2822

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19

Chain AL34

60S ribosomal protein L34