J3_9BDN_018

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

9BDN|1|A28S|C|4116, 9BDN|1|A28S|U|4117, 9BDN|1|A28S|U|4118, 9BDN|1|A28S|C|4119, 9BDN|1|A28S|U|4120, 9BDN|1|A28S|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDN_018 not in the Motif Atlas

Homologous match to J3_8P9A_060

Geometric discrepancy: 0.3331

The information below is about J3_8P9A_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28639.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9BDN|1|A28S|G|4091
9BDN|1|A28S|G|4092
9BDN|1|A28S|G|4093
9BDN|1|A28S|G|4094
*
9BDN|1|A28S|C|4114
9BDN|1|A28S|G|4115
9BDN|1|A28S|C|4116
9BDN|1|A28S|U|4117
9BDN|1|A28S|U|4118
9BDN|1|A28S|C|4119
9BDN|1|A28S|U|4120
9BDN|1|A28S|G|4121
9BDN|1|A28S|G|4122
9BDN|1|A28S|C|4123
9BDN|1|A28S|G|4124
9BDN|1|A28S|C|4125
9BDN|1|A28S|C|4126
9BDN|1|A28S|A|4127
9BDN|1|A28S|A|4128
9BDN|1|A28S|G|4129
*
9BDN|1|A28S|C|4155
9BDN|1|A28S|G|4156
9BDN|1|A28S|A|4157
9BDN|1|A28S|C|4158

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL08

Large ribosomal subunit protein eL8

Chain AL27

60S ribosomal protein L27

Chain AL30

60S ribosomal protein L30

Chain AL34

60S ribosomal protein L34

Chain AL43

60S ribosomal protein L37a