J3_9BDN_037
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 9BDN|1|A58S|A|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDN_037 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.1833
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
9BDN|1|A58S|A|44
9BDN|1|A58S|C|45
*
9BDN|1|A58S|G|58
9BDN|1|A58S|A|59
9BDN|1|A58S|G|60
9BDN|1|A58S|A|61
9BDN|1|A58S|A|62
9BDN|1|A58S|U|63
9BDN|1|A58S|U|64
*
9BDN|1|A58S|A|95
9BDN|1|A58S|C|96
9BDN|1|A58S|A|97
9BDN|1|A58S|C|98
9BDN|1|A58S|U|99
Current chains
- Chain A58S
- 5.8S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL25
- Large ribosomal subunit protein uL23
- Chain AL35
- 60S ribosomal protein L35
- Chain AL37
- 60S ribosomal protein L37
- Chain AL39
- 60S ribosomal protein L39
Coloring options: