J3_9BDP_001
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDP_001 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.2388
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BDP|1|A18S|A|816
9BDP|1|A18S|G|817
9BDP|1|A18S|A|818
9BDP|1|A18S|G|819
*
9BDP|1|A18S|C|829
9BDP|1|A18S|A|830
9BDP|1|A18S|G|831
*
9BDP|1|A18S|C|843
9BDP|1|A18S|U|844
9BDP|1|A18S|G|845
9BDP|1|A18S|G|846
9BDP|1|A18S|A|847
9BDP|1|A18S|U|848
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS04
- 40S ribosomal protein S4
- Chain AS09
- 40S ribosomal protein S9
- Chain AS24
- 40S ribosomal protein S24
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