J3_9BDP_011
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9BDP|1|A28S|A|1534, 9BDP|1|A28S|G|1641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDP_011 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1192
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BDP|1|A28S|U|1531
9BDP|1|A28S|G|1532
9BDP|1|A28S|A|1533
9BDP|1|A28S|A|1534
9BDP|1|A28S|C|1535
9BDP|1|A28S|U|1536
9BDP|1|A28S|A|1537
*
9BDP|1|A28S|U|1622
9BDP|1|A28S|A|1623
9BDP|1|A28S|G|1624
*
9BDP|1|A28S|C|1640
9BDP|1|A28S|G|1641
9BDP|1|A28S|A|1642
9BDP|1|A28S|A|1643
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL02
- 60S ribosomal protein L8
- Chain AL15
- 60S ribosomal protein L15
- Chain AL37
- 60S ribosomal protein L37
- Chain AL39
- 60S ribosomal protein L39
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