J3_9BDP_021

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9BDP|1|A18S|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDP_021 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1002

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

9BDP|1|A18S|A|40
9BDP|1|A18S|G|41
9BDP|1|A18S|A|42
9BDP|1|A18S|U|43
9BDP|1|A18S|U|44
9BDP|1|A18S|A|45
9BDP|1|A18S|A|46
9BDP|1|A18S|G|47
*
9BDP|1|A18S|C|479
9BDP|1|A18S|G|480
9BDP|1|A18S|C|481
9BDP|1|A18S|G|482
9BDP|1|A18S|C|483
9BDP|1|A18S|A|484
9BDP|1|A18S|A|485
9BDP|1|A18S|A|486
9BDP|1|A18S|U|487
*
9BDP|1|A18S|A|512
9BDP|1|A18S|G|513
9BDP|1|A18S|U|514

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS23

40S ribosomal protein S23

Chain EF1A

Elongation factor 1-alpha