J3_9BDP_035
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BDP_035 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.1754
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9BDP|1|A28S|U|2440
9BDP|1|A28S|C|2441
9BDP|1|A28S|G|2442
9BDP|1|A28S|G|2443
9BDP|1|A28S|U|2444
9BDP|1|A28S|C|2445
*
9BDP|1|A28S|G|2515
9BDP|1|A28S|G|2516
9BDP|1|A28S|A|2517
9BDP|1|A28S|G|2518
9BDP|1|A28S|U|2519
*
9BDP|1|A28S|A|2536
9BDP|1|A28S|A|2537
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL25
- Large ribosomal subunit protein uL23
- Chain AL34
- 60S ribosomal protein L34
- Chain AL38
- Large ribosomal subunit protein eL38
- Chain AL39
- 60S ribosomal protein L39
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