J3_9BDP_038

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BDP_038 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.263

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

9BDP|1|A28S|U|2575
9BDP|1|A28S|G|2576
*
9BDP|1|A28S|C|2585
9BDP|1|A28S|G|2586
9BDP|1|A28S|A|2587
9BDP|1|A28S|C|2588
9BDP|1|A28S|C|2589
*
9BDP|1|A28S|G|2756
9BDP|1|A28S|A|2757

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL27

60S ribosomal protein L27

Chain AL34

60S ribosomal protein L34