J3_9BH5_003

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CAG*CGUAU*AUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BH5_003 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1197

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9BH5|1|A5|C|884
9BH5|1|A5|A|885
9BH5|1|A5|G|886
*
9BH5|1|A5|C|918
9BH5|1|A5|G|919
9BH5|1|A5|U|920
9BH5|1|A5|A|921
9BH5|1|A5|U|922
*
9BH5|1|A5|A|947
9BH5|1|A5|U|948
9BH5|1|A5|A|949
9BH5|1|A5|G|950

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CA

Large ribosomal subunit protein uL2

Chain CR

Large ribosomal subunit protein eL19

Chain Cg

Large ribosomal subunit protein eL34