J3_9BH5_004

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

9BH5|1|A5|A|1547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BH5_004 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0811

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

9BH5|1|A5|U|1544
9BH5|1|A5|G|1545
9BH5|1|A5|A|1546
9BH5|1|A5|A|1547
9BH5|1|A5|G|1548
9BH5|1|A5|U|1549
9BH5|1|A5|G|1550
*
9BH5|1|A5|C|1950
9BH5|1|A5|A|1951
9BH5|1|A5|A|1952
*
9BH5|1|A5|U|1964
9BH5|1|A5|C|1965
9BH5|1|A5|U|1966
9BH5|1|A5|A|1967

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CR

Large ribosomal subunit protein eL19

Chain Cg

Large ribosomal subunit protein eL34