J3_9BH5_006
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUG*CUUAU*AGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_006 not in the Motif Atlas
- Geometric match to J3_8VTW_006
- Geometric discrepancy: 0.2681
- The information below is about J3_8VTW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.4
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BH5|1|A5|U|2536
9BH5|1|A5|U|2537
9BH5|1|A5|G|2538
*
9BH5|1|A5|C|2617
9BH5|1|A5|U|2618
9BH5|1|A5|U|2619
9BH5|1|A5|A|2620
9BH5|1|A5|U|2621
*
9BH5|1|A5|A|2703
9BH5|1|A5|G|2704
9BH5|1|A5|A|2705
9BH5|1|A5|C|2706
9BH5|1|A5|A|2707
9BH5|1|A5|G|2708
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CA
- Large ribosomal subunit protein uL2
- Chain CG
- Large ribosomal subunit protein eL8
- Chain CN
- Large ribosomal subunit protein eL15
- Chain Ci
- Large ribosomal subunit protein eL36
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