J3_9BH5_008
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9BH5|1|A5|A|2999, 9BH5|1|A5|U|3000
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_008 not in the Motif Atlas
- Homologous match to J3_8P9A_063
- Geometric discrepancy: 0.0972
- The information below is about J3_8P9A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.2
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9BH5|1|A5|U|2998
9BH5|1|A5|A|2999
9BH5|1|A5|U|3000
9BH5|1|A5|C|3001
*
9BH5|1|A5|G|3026
9BH5|1|A5|U|3027
9BH5|1|A5|U|3028
*
9BH5|1|A5|A|3042
9BH5|1|A5|C|3043
9BH5|1|A5|U|3044
9BH5|1|A5|A|3045
9BH5|1|A5|A|3046
9BH5|1|A5|U|3047
9BH5|1|A5|A|3048
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CB
- Large ribosomal subunit protein uL3
- Chain CO
- Large ribosomal subunit protein uL13
- Chain CV
- Large ribosomal subunit protein uL14
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