J3_9BH5_016
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCGAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_016 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.3416
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9BH5|1|B2|U|1242
9BH5|1|B2|C|1243
9BH5|1|B2|U|1244
9BH5|1|B2|U|1245
9BH5|1|B2|A|1246
9BH5|1|B2|G|1247
*
9BH5|1|B2|C|1286
9BH5|1|B2|G|1287
9BH5|1|B2|A|1288
9BH5|1|B2|G|1289
9BH5|1|B2|A|1290
9BH5|1|B2|C|1291
*
9BH5|1|B2|G|1375
9BH5|1|B2|C|1376
9BH5|1|B2|G|1377
9BH5|1|B2|A|1378
9BH5|1|B2|U|1379
9BH5|1|B2|A|1380
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AC
- Small ribosomal subunit protein uS5
- Chain AD
- Small ribosomal subunit protein uS3
- Chain AQ
- Small ribosomal subunit protein uS9
- Chain AR
- Small ribosomal subunit protein eS17
- Chain AU
- Small ribosomal subunit protein uS10
- Chain Ad
- Small ribosomal subunit protein uS14
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