J3_9BH5_018
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CACUG*CAUGUCCG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9BH5|1|B2|U|1429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_018 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.24
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BH5|1|B2|C|1426
9BH5|1|B2|A|1427
9BH5|1|B2|C|1428
9BH5|1|B2|U|1429
9BH5|1|B2|G|1430
*
9BH5|1|B2|C|1489
9BH5|1|B2|A|1490
9BH5|1|B2|U|1491
9BH5|1|B2|G|1492
9BH5|1|B2|U|1493
9BH5|1|B2|C|1494
9BH5|1|B2|C|1495
9BH5|1|B2|G|1496
*
9BH5|1|B2|C|1527
9BH5|1|B2|G|1528
9BH5|1|B2|A|1529
9BH5|1|B2|G|1530
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AF
- Small ribosomal subunit protein uS7
- Chain AS
- Small ribosomal subunit protein uS13
- Chain AT
- Small ribosomal subunit protein eS19
- Chain AZ
- Small ribosomal subunit protein eS25
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