J3_9BH5_021
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUGCAAAG*CG*CG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_021 not in the Motif Atlas
- Geometric match to J3_8VTW_036
- Geometric discrepancy: 0.1153
- The information below is about J3_8VTW_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9BH5|1|A5|U|375
9BH5|1|A5|U|376
9BH5|1|A5|G|377
9BH5|1|A5|C|378
9BH5|1|A5|A|379
9BH5|1|A5|A|380
9BH5|1|A5|A|381
9BH5|1|A5|G|382
*
9BH5|1|A5|C|409
9BH5|1|A5|G|410
*
9BH5|1|A8|C|19
9BH5|1|A8|G|20
Current chains
- Chain A5
- 28S rRNA
- Chain A8
- 5.8S rRNA
Nearby chains
- Chain CC
- Large ribosomal subunit protein uL4
- Chain CP
- Large ribosomal subunit protein uL22
- Chain CY
- Large ribosomal subunit protein uL24
- Chain Cl
- Large ribosomal subunit protein eL39
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