J3_9BH5_024

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UA*UGAAG*CGUGA

Length

12 nucleotides

Bulged bases

9BH5|1|A5|A|1119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BH5_024 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4889

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.2

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

5

Unit IDs

9BH5|1|A5|U|1040
9BH5|1|A5|A|1041
*
9BH5|1|A5|U|1116
9BH5|1|A5|G|1117
9BH5|1|A5|A|1118
9BH5|1|A5|A|1119
9BH5|1|A5|G|1120
*
9BH5|1|A5|C|1147
9BH5|1|A5|G|1148
9BH5|1|A5|U|1149
9BH5|1|A5|G|1150
9BH5|1|A5|A|1151

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CF

Large ribosomal subunit protein uL30

Chain CT

Large ribosomal subunit protein eL21

Chain Cb

60S ribosomal protein L29