J3_9BH5_029
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9BH5|1|A5|C|2872, 9BH5|1|A5|U|2909
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BH5_029 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0532
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9BH5|1|A5|G|2763
9BH5|1|A5|U|2764
9BH5|1|A5|C|2765
*
9BH5|1|A5|G|2866
9BH5|1|A5|C|2867
9BH5|1|A5|C|2868
9BH5|1|A5|U|2869
9BH5|1|A5|A|2870
9BH5|1|A5|U|2871
9BH5|1|A5|C|2872
9BH5|1|A5|G|2873
9BH5|1|A5|A|2874
9BH5|1|A5|U|2875
9BH5|1|A5|C|2876
9BH5|1|A5|C|2877
*
9BH5|1|A5|G|2905
9BH5|1|A5|G|2906
9BH5|1|A5|U|2907
9BH5|1|A5|G|2908
9BH5|1|A5|U|2909
9BH5|1|A5|C|2910
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CQ
- Large ribosomal subunit protein eL18
- Chain CT
- Large ribosomal subunit protein eL21
- Chain Ca
- Large ribosomal subunit protein uL15
- Chain Co
- Large ribosomal subunit protein eL42
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