J3_9BKD_002
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BKD_002 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.1951
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BKD|1|A|A|816
9BKD|1|A|G|817
9BKD|1|A|A|818
9BKD|1|A|G|819
*
9BKD|1|A|C|829
9BKD|1|A|A|830
9BKD|1|A|G|831
*
9BKD|1|A|C|843
9BKD|1|A|U|844
9BKD|1|A|G|845
9BKD|1|A|G|846
9BKD|1|A|A|847
9BKD|1|A|U|848
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein eS4, X isoform
- Chain D
- Small ribosomal subunit protein uS4
- Chain T
- Small ribosomal subunit protein eS24
Coloring options: