J3_9BKD_005
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- C(JMH)AG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 9BKD|1|A|A|1679
- QA status
- Modified nucleotides: JMH, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BKD_005 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.0997
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BKD|1|A|C|1218
9BKD|1|A|JMH|1219
9BKD|1|A|A|1220
9BKD|1|A|G|1221
*
9BKD|1|A|C|1645
9BKD|1|A|C|1646
9BKD|1|A|A|1647
9BKD|1|A|G|1648
9BKD|1|A|U|1649
9BKD|1|A|A|1650
9BKD|1|A|A|1651
*
9BKD|1|A|U|1673
9BKD|1|A|G|1674
9BKD|1|A|A|1675
9BKD|1|A|U|1676
9BKD|1|A|U|1677
9BKD|1|A|A2M|1678
9BKD|1|A|A|1679
9BKD|1|A|G|1680
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain V
- 40S ribosomal protein S5
- Chain Y
- 40S ribosomal protein S16
- Chain n
- 40S ribosomal protein S28
Coloring options: