J3_9BKD_006
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BKD_006 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0812
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BKD|1|A|U|1225
9BKD|1|A|G|1226
9BKD|1|A|G|1227
9BKD|1|A|A|1228
*
9BKD|1|A|U|1530
9BKD|1|A|A|1531
9BKD|1|A|C|1532
*
9BKD|1|A|G|1638
9BKD|1|A|G|1639
9BKD|1|A|A|1640
9BKD|1|A|A|1641
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain V
- 40S ribosomal protein S5
- Chain Y
- 40S ribosomal protein S16
- Chain d
- 40S ribosomal protein S19
- Chain f
- Small ribosomal subunit protein uS13
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