J3_9BKD_008
3D structure
- PDB id
- 9BKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of human Pdcd4 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9BKD|1|A|G|1274, 9BKD|1|A|G|1507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BKD_008 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.0928
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9BKD|1|A|C|1272
9BKD|1|A|C|1273
9BKD|1|A|G|1274
9BKD|1|A|G|1275
9BKD|1|A|A|1276
9BKD|1|A|C|1277
*
9BKD|1|A|G|1320
9BKD|1|A|G|1321
9BKD|1|A|G|1322
9BKD|1|A|U|1323
9BKD|1|A|G|1324
*
9BKD|1|A|U|1504
9BKD|1|A|U|1505
9BKD|1|A|A|1506
9BKD|1|A|G|1507
9BKD|1|A|A|1508
9BKD|1|A|U|1509
9BKD|1|A|G|1510
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain a
- Small ribosomal subunit protein eS10
- Chain i
- 40S ribosomal protein S29
- Chain k
- Ubiquitin-40S ribosomal protein S27a
Coloring options: