J3_9BS0_014
3D structure
- PDB id
- 9BS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- YphC-treated 45SYphC particle. Class 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CC*GUUGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 9BS0|1|A|U|2858, 9BS0|1|A|A|2860
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BS0_014 not in the Motif Atlas
- Homologous match to J3_4WF9_021
- Geometric discrepancy: 0.3062
- The information below is about J3_4WF9_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BS0|1|A|C|2839
9BS0|1|A|C|2840
*
9BS0|1|A|G|2856
9BS0|1|A|U|2857
9BS0|1|A|U|2858
9BS0|1|A|G|2859
9BS0|1|A|A|2860
9BS0|1|A|U|2861
*
9BS0|1|A|A|2907
9BS0|1|A|A|2908
9BS0|1|A|U|2909
9BS0|1|A|C|2910
9BS0|1|A|G|2911
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain J
- Large ribosomal subunit protein bL17
- Chain T
- Large ribosomal subunit protein bL32
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