J3_9BSS_007

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

9BSS|1|A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BSS_007 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.1757

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9BSS|1|A|C|1337
9BSS|1|A|G|1338
9BSS|1|A|A|1339
9BSS|1|A|A|1340
9BSS|1|A|U|1341
9BSS|1|A|G|1342
*
9BSS|1|A|C|1670
9BSS|1|A|G|1671
9BSS|1|A|A|1672
*
9BSS|1|A|U|1684
9BSS|1|A|A|1685
9BSS|1|A|A|1686
9BSS|1|A|G|1687

Current chains

Chain A

23S rRNA

Nearby chains