J3_9BSS_010

3D structure

PDB id

9BSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

45SRbgA particle in complex with RbgA and YphC. Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGAA*UUCUAACC*GAGACAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BSS_010 not in the Motif Atlas

Homologous match to J3_4WF9_018

Geometric discrepancy: 0.5393

The information below is about J3_4WF9_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60833.1

Basepair signature

cWW-F-F-F-tHH-F-cWW-F-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

9BSS|1|A|U|2120
9BSS|1|A|U|2121
9BSS|1|A|G|2122
9BSS|1|A|A|2123
9BSS|1|A|A|2124
*
9BSS|1|A|U|2223
9BSS|1|A|U|2224
9BSS|1|A|C|2225
9BSS|1|A|U|2226
9BSS|1|A|A|2227
9BSS|1|A|A|2228
9BSS|1|A|C|2229
9BSS|1|A|C|2230
*
9BSS|1|A|G|2251
9BSS|1|A|A|2252
9BSS|1|A|G|2253
9BSS|1|A|A|2254
9BSS|1|A|C|2255
9BSS|1|A|A|2256
9BSS|1|A|G|2257

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2