J3_9BUP_002

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAG*CCCCAUAGAG*CAUAG

Length

20 nucleotides

Bulged bases

9BUP|1|AA|U|218

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BUP_002 not in the Motif Atlas

Geometric match to J3_9DFE_006

Geometric discrepancy: 0.1088

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9BUP|1|AA|C|193
9BUP|1|AA|A|194
9BUP|1|AA|A|195
9BUP|1|AA|A|196
9BUP|1|AA|G|197
*
9BUP|1|AA|C|213
9BUP|1|AA|C|214
9BUP|1|AA|C|215
9BUP|1|AA|C|216
9BUP|1|AA|A|217
9BUP|1|AA|U|218
9BUP|1|AA|A|219
9BUP|1|AA|G|220
9BUP|1|AA|A|221
9BUP|1|AA|G|222
*
9BUP|1|AA|C|234
9BUP|1|AA|A|235
9BUP|1|AA|U|236
9BUP|1|AA|A|237
9BUP|1|AA|G|238

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L4

Chain AZ

60S ribosomal protein L26