J3_9BUP_012
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 9BUP|1|AA|A|1631, 9BUP|1|AA|U|1633
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_012 not in the Motif Atlas
- Homologous match to J3_8P9A_053
- Geometric discrepancy: 0.2669
- The information below is about J3_8P9A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05025.1
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9BUP|1|AA|U|1628
9BUP|1|AA|G|1629
9BUP|1|AA|A|1630
9BUP|1|AA|A|1631
9BUP|1|AA|G|1632
9BUP|1|AA|U|1633
9BUP|1|AA|G|1634
*
9BUP|1|AA|C|2124
9BUP|1|AA|A|2125
9BUP|1|AA|A|2126
*
9BUP|1|AA|U|2138
9BUP|1|AA|C|2139
9BUP|1|AA|U|2140
9BUP|1|AA|G|2141
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AT
- 60S ribosomal protein L19
- Chain Aa
- 60S ribosomal protein L34
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