J3_9BUP_016

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUACA*UC*GAAAAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BUP_016 not in the Motif Atlas

Homologous match to J3_8CRE_018

Geometric discrepancy: 0.0899

The information below is about J3_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9BUP|1|AA|U|1809
9BUP|1|AA|U|1810
9BUP|1|AA|A|1811
9BUP|1|AA|C|1812
9BUP|1|AA|A|1813
*
9BUP|1|AA|U|2013
9BUP|1|AA|C|2014
*
9BUP|1|AA|G|2018
9BUP|1|AA|A|2019
9BUP|1|AA|A|2020
9BUP|1|AA|A|2021
9BUP|1|AA|A|2022
9BUP|1|AA|A|2023

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2

Chain Aa

60S ribosomal protein L34

Chain Ah

Large ribosomal subunit protein eL43