J3_9BUP_021
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUC*GUC*GCUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 9BUP|1|AA|A|3246, 9BUP|1|AA|U|3247
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_021 not in the Motif Atlas
- Homologous match to J3_8CRE_023
- Geometric discrepancy: 0.0686
- The information below is about J3_8CRE_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_62630.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|AA|U|3245
9BUP|1|AA|A|3246
9BUP|1|AA|U|3247
9BUP|1|AA|C|3248
*
9BUP|1|AA|G|3273
9BUP|1|AA|U|3274
9BUP|1|AA|C|3275
*
9BUP|1|AA|G|3289
9BUP|1|AA|C|3290
9BUP|1|AA|U|3291
9BUP|1|AA|A|3292
9BUP|1|AA|A|3293
9BUP|1|AA|U|3294
9BUP|1|AA|A|3295
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein L3
- Chain AK
- 60S ribosomal protein L13
- Chain AM
- 60S ribosomal protein L23
- Chain Af
- Ubiquitin-60S ribosomal protein L40
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