J3_9BUP_024
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9BUP|1|AB|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_024 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.2377
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9BUP|1|AB|U|9
9BUP|1|AB|C|10
9BUP|1|AB|A|11
9BUP|1|AB|U|12
9BUP|1|AB|A|13
9BUP|1|AB|C|14
*
9BUP|1|AB|G|65
9BUP|1|AB|G|66
*
9BUP|1|AB|U|109
9BUP|1|AB|G|110
Current chains
- Chain AB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain AQ
- 60S ribosomal protein L10
- Chain AR
- 60S ribosomal protein L5
- Chain AV
- 60S ribosomal protein L21
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