J3_9BUP_026

3D structure

PDB id

9BUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AG*CGUAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9BUP_026 not in the Motif Atlas

Geometric match to J3_8CRE_071

Geometric discrepancy: 0.0715

The information below is about J3_8CRE_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9BUP|1|SA|A|41
9BUP|1|SA|G|42
*
9BUP|1|SA|C|439
9BUP|1|SA|G|440
9BUP|1|SA|U|441
9BUP|1|SA|A|442
9BUP|1|SA|A|443
9BUP|1|SA|A|444
9BUP|1|SA|U|445
*
9BUP|1|SA|A|470
9BUP|1|SA|G|471
9BUP|1|SA|U|472

Current chains

Chain SA

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S9

Chain SQ

40S ribosomal protein S23