J3_9BUP_030
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAG*CAA*UUGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_030 not in the Motif Atlas
- Homologous match to J3_8P9A_073
- Geometric discrepancy: 0.2237
- The information below is about J3_8P9A_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.2
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|SA|A|810
9BUP|1|SA|G|811
9BUP|1|SA|A|812
9BUP|1|SA|G|813
*
9BUP|1|SA|C|823
9BUP|1|SA|A|824
9BUP|1|SA|A|825
*
9BUP|1|SA|U|848
9BUP|1|SA|U|849
9BUP|1|SA|G|850
9BUP|1|SA|A|851
9BUP|1|SA|A|852
9BUP|1|SA|U|853
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S1
- 40S ribosomal protein S24
- Chain SE
- 40S ribosomal protein S9
- Chain SF
- 40S ribosomal protein S4
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