J3_9BUP_034
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_034 not in the Motif Atlas
- Homologous match to J3_8CRE_079
- Geometric discrepancy: 0.3593
- The information below is about J3_8CRE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|U|1269
9BUP|1|SA|G|1270
9BUP|1|SA|G|1271
9BUP|1|SA|A|1272
*
9BUP|1|SA|U|1714
9BUP|1|SA|A|1715
9BUP|1|SA|C|1716
*
9BUP|1|SA|G|1871
9BUP|1|SA|G|1872
9BUP|1|SA|A|1873
9BUP|1|SA|A|1874
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S7
- Transfer RNA; tRNA
- Chain S8
- Transfer RNA; tRNA
- Chain SI
- 40S ribosomal protein S5
- Chain SM
- 40S ribosomal protein S16
- Chain SY
- 40S ribosomal protein S19
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