J3_9BUP_035
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9BUP|1|SA|U|1286, 9BUP|1|SA|G|1300, 9BUP|1|SA|G|1302, 9BUP|1|SA|A|1304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_035 not in the Motif Atlas
- Homologous match to J3_8CRE_080
- Geometric discrepancy: 0.3059
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9BUP|1|SA|C|1281
9BUP|1|SA|U|1282
9BUP|1|SA|U|1283
9BUP|1|SA|A|1284
9BUP|1|SA|A|1285
9BUP|1|SA|U|1286
9BUP|1|SA|U|1287
9BUP|1|SA|U|1288
*
9BUP|1|SA|G|1299
9BUP|1|SA|G|1300
9BUP|1|SA|G|1301
9BUP|1|SA|G|1302
9BUP|1|SA|A|1303
9BUP|1|SA|A|1304
9BUP|1|SA|A|1305
9BUP|1|SA|C|1306
9BUP|1|SA|U|1307
9BUP|1|SA|C|1308
9BUP|1|SA|A|1309
9BUP|1|SA|C|1310
*
9BUP|1|SA|G|1700
9BUP|1|SA|G|1701
9BUP|1|SA|C|1702
9BUP|1|SA|U|1703
9BUP|1|SA|G|1704
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain S9
- Transfer RNA; tRNA
- Chain SN
- 40S ribosomal protein S20e
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- 40S ribosomal protein S29
- Chain SX
- 40S ribosomal protein S19
Coloring options: