J3_9BUP_036
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAAGAC*GGAUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 9BUP|1|SA|A|1318, 9BUP|1|SA|G|1691, 9BUP|1|SA|U|1693
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_036 not in the Motif Atlas
- Homologous match to J3_8CRE_081
- Geometric discrepancy: 0.3181
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.2
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|SA|U|1316
9BUP|1|SA|A|1317
9BUP|1|SA|A|1318
9BUP|1|SA|G|1319
9BUP|1|SA|A|1320
9BUP|1|SA|C|1321
*
9BUP|1|SA|G|1364
9BUP|1|SA|G|1365
9BUP|1|SA|A|1366
9BUP|1|SA|U|1367
9BUP|1|SA|G|1368
*
9BUP|1|SA|U|1688
9BUP|1|SA|U|1689
9BUP|1|SA|A|1690
9BUP|1|SA|G|1691
9BUP|1|SA|A|1692
9BUP|1|SA|U|1693
9BUP|1|SA|G|1694
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SO
- 40S ribosomal protein S10
- Chain ST
- 40S ribosomal protein S29
Coloring options: