J3_9BUP_037
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUUAG*CGAGAUC*GGCAACA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9BUP_037 not in the Motif Atlas
- Geometric match to J3_4LFB_007
- Geometric discrepancy: 0.3871
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|SA|U|1384
9BUP|1|SA|U|1385
9BUP|1|SA|U|1386
9BUP|1|SA|U|1387
9BUP|1|SA|A|1388
9BUP|1|SA|G|1389
*
9BUP|1|SA|C|1429
9BUP|1|SA|G|1430
9BUP|1|SA|A|1431
9BUP|1|SA|G|1432
9BUP|1|SA|A|1433
9BUP|1|SA|U|1434
9BUP|1|SA|C|1435
*
9BUP|1|SA|G|1664
9BUP|1|SA|G|1665
9BUP|1|SA|C|1666
9BUP|1|SA|A|1667
9BUP|1|SA|A|1668
9BUP|1|SA|C|1669
9BUP|1|SA|A|1670
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SG
- 40S ribosomal protein S5
- Chain SM
- 40S ribosomal protein S16
- Chain SN
- 40S ribosomal protein S20e
- Chain ST
- 40S ribosomal protein S29
- Chain SW
- 40S ribosomal protein S17
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