J3_9C3H_002
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CA*UUGAAAAGAAC*GAGUUCAAGAGGGCG
- Length
- 28 nucleotides
- Bulged bases
- 9C3H|1|L5|G|409, 9C3H|1|L5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C3H_002 not in the Motif Atlas
- Geometric match to J3_5TBW_062
- Geometric discrepancy: 0.0875
- The information below is about J3_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9C3H|1|L1|C|19
9C3H|1|L1|A|20
*
9C3H|1|L5|U|380
9C3H|1|L5|U|381
9C3H|1|L5|G|382
9C3H|1|L5|A|383
9C3H|1|L5|A|384
9C3H|1|L5|A|385
9C3H|1|L5|A|386
9C3H|1|L5|G|387
9C3H|1|L5|A|388
9C3H|1|L5|A|389
9C3H|1|L5|C|390
*
9C3H|1|L5|G|401
9C3H|1|L5|A|402
9C3H|1|L5|G|403
9C3H|1|L5|U|404
9C3H|1|L5|U|405
9C3H|1|L5|C|406
9C3H|1|L5|A|407
9C3H|1|L5|A|408
9C3H|1|L5|G|409
9C3H|1|L5|A|410
9C3H|1|L5|G|411
9C3H|1|L5|G|412
9C3H|1|L5|G|413
9C3H|1|L5|C|414
9C3H|1|L5|G|415
Current chains
- Chain L1
- 5.8S rRNA
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LE
- Large ribosomal subunit protein uL24
- Chain LU
- Large ribosomal subunit protein eL39
- Chain Lh
- Large ribosomal subunit protein uL22
Coloring options: