J3_9C3H_018

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9C3H_018 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1193

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

9C3H|1|L5|A|2598
9C3H|1|L5|G|2599
9C3H|1|L5|A|2600
9C3H|1|L5|A|2601
9C3H|1|L5|G|2602
*
9C3H|1|L5|C|2737
9C3H|1|L5|C|2738
*
9C3H|1|L5|G|2742
9C3H|1|L5|A|2743
9C3H|1|L5|A|2744
9C3H|1|L5|A|2745
9C3H|1|L5|A|2746
9C3H|1|L5|U|2747

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain Lg

Large ribosomal subunit protein eL34

Chain Lp

Large ribosomal subunit protein eL43