J3_9C3H_019

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

9C3H|1|L5|G|4076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9C3H_019 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1378

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

9C3H|1|L5|C|3937
9C3H|1|L5|G|3938
9C3H|1|L5|G|3939
*
9C3H|1|L5|C|4074
9C3H|1|L5|U|4075
9C3H|1|L5|G|4076
9C3H|1|L5|A|4077
9C3H|1|L5|C|4078
*
9C3H|1|L5|G|4168
9C3H|1|L5|G|4169
9C3H|1|L5|A|4170
9C3H|1|L5|C|4171
9C3H|1|L5|A|4172
9C3H|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LD

Large ribosomal subunit protein uL2

Chain LG

Large ribosomal subunit protein eL8

Chain LN

Large ribosomal subunit protein eL15