J3_9C3H_021
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9C3H|1|L5|C|4337, 9C3H|1|L5|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C3H_021 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0683
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9C3H|1|L5|OMG|4228
9C3H|1|L5|U|4229
9C3H|1|L5|C|4230
*
9C3H|1|L5|G|4331
9C3H|1|L5|C|4332
9C3H|1|L5|C|4333
9C3H|1|L5|U|4334
9C3H|1|L5|C|4335
9C3H|1|L5|A|4336
9C3H|1|L5|C|4337
9C3H|1|L5|G|4338
9C3H|1|L5|A|4339
9C3H|1|L5|U|4340
9C3H|1|L5|C|4341
9C3H|1|L5|C|4342
*
9C3H|1|L5|OMG|4370
9C3H|1|L5|G|4371
9C3H|1|L5|U|4372
9C3H|1|L5|G|4373
9C3H|1|L5|U|4374
9C3H|1|L5|C|4375
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LT
- Large ribosomal subunit protein eL21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Le
- Large ribosomal subunit protein eL42
- Chain Lj
- Large ribosomal subunit protein eL18
- Chain SB
- CCR4-NOT transcription complex subunit 3
Coloring options: