J3_9C3H_022
3D structure
- PDB id
- 9C3H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9C3H|1|L5|A|4280, 9C3H|1|L5|A|4282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9C3H_022 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0697
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9C3H|1|L5|C|4241
9C3H|1|L5|U|4242
9C3H|1|L5|C|4243
*
9C3H|1|L5|G|4267
9C3H|1|L5|A|4268
9C3H|1|L5|G|4269
*
9C3H|1|L5|C|4278
9C3H|1|L5|A|4279
9C3H|1|L5|A|4280
9C3H|1|L5|A|4281
9C3H|1|L5|A|4282
9C3H|1|L5|G|4283
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- Large ribosomal subunit protein uL18
- Chain L9
- 5S ribosomal RNA; 5S rRNA
- Chain LJ
- Large ribosomal subunit protein uL5
- Chain LT
- Large ribosomal subunit protein eL21
- Chain S4
- Transfer RNA; tRNA
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