J3_9C3H_024

3D structure

PDB id

9C3H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9C3H|1|L5|U|4882, 9C3H|1|L5|A|4938, 9C3H|1|L5|C|4940, 9C3H|1|L5|A|4943, 9C3H|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9C3H|1|L5|G|4751
9C3H|1|L5|U|4752
9C3H|1|L5|U|4753
9C3H|1|L5|G|4754
*
9C3H|1|L5|C|4879
9C3H|1|L5|C|4880
9C3H|1|L5|U|4881
9C3H|1|L5|U|4882
9C3H|1|L5|C|4883
*
9C3H|1|L5|G|4936
9C3H|1|L5|C|4937
9C3H|1|L5|A|4938
9C3H|1|L5|C|4939
9C3H|1|L5|C|4940
9C3H|1|L5|G|4941
9C3H|1|L5|C|4942
9C3H|1|L5|A|4943
9C3H|1|L5|C|4944
9C3H|1|L5|G|4945
9C3H|1|L5|U|4946
9C3H|1|L5|U|4947
9C3H|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LK

Large ribosomal subunit protein eL6

Chain LM

Large ribosomal subunit protein eL14

Chain LY

Large ribosomal subunit protein uL13

Chain Lf

Large ribosomal subunit protein eL33